Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKRIARIAVATYMGLAVNMGLAVNAVQAATTFLNVSYDP-TRE-FYQEYNQAFGKFWKQRTGQDVDFKQSHGGSGKQARAVATG-LEADVVTLALANDIDEIVKAGFIQP--NWQ---KEFP------NNSAPYTSTVVFLVRKGNPK--NIRDWNDLTKPG-V--EIITPNPKTGGAPRWIYLSAWGYALKQPG------GNDAKAKELVKKLYHNVNVLDLGARGSLTTFAERGIGDVLLSWENEALLATKGLDKDKYEIVYPSISILAEPSVAIVDKTVDKDGNRTLAKGYLNFLYSPLGQELAAK-HYFRPRNPQVAA--KYA----AQF---PK-IK-LF-----TINDVFGGWAKAQKTHFANGAIFDQIYDGKQ
5L9G Chain:A ((21-344))-----------------------------MDVVIASSGGGWQEAQDKALWAPAAKA----LNITYTQDTFQ-NWAEARAQVESGSVTWDIIQIGIA-DEPQAKAAGVLEKLDPDIVNKADFPPGSVTDSFVANSNYSTLIAWNKKTYGDNGPKSMADFFDVKKFPGKRALWNQPIG--MIEAAALALGTPRDKVYEFLSTEEGRKAAIAKLTELAPSVSVWWESGA-QAAQLIKDGEVDMIITWGGRVQGAIND-G-ANFAYTFN-DAQLGTDGYAIVKGA----PHRDAAMRFLKEMSKAEYQKDLPNSFATAPANMKAYDLAKYTPEKMATMASAPENVAVQYSVDPNFWAKHAKWASEAYDNVRLS------------


General information:
TITO was launched using:
RESULT:

Template: 5L9G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1534 63192 41.19 224.08
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : 41.19
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.458

(partial model without unconserved sides chains):
PDB file : Tito_5L9G.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5L9G-query.scw
PDB file : Tito_Scwrl_5L9G.pdb: