Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKMLIRKAKKDDTDTIVAIIAPYVDQVIANDEGRSRFKSEAIQTIFDREDIHYFVGEIDQQIVGIVAYME-----PSHLMHFFIKKTHLKLGLGRQLWDFIEEKIKNEN-IDIEKITVNS-SFYAQDIYEKFGFIVSGDAAEK--WG--IRFIPMTKYYALASEK
4L8A Chain:A ((3-161))MQLSHRPAETGDLETVAGFPQDRDELFYCYPKAIWPFSVAQLAAAIAE-RRGSTVAVHDGQVLGFANFYQWQHGDFCALGNMMVAPAARGLGVARYLIGVMENLAREQYKARLMKISCFNANAAGLLLYTQLGYQPRAIAERHDPDGRRVALIQMDKPLE-----


General information:
TITO was launched using:
RESULT:

Template: 4L8A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 675 -55536 -82.28 -375.24
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : -82.28
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.410

(partial model without unconserved sides chains):
PDB file : Tito_4L8A.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4L8A-query.scw
PDB file : Tito_Scwrl_4L8A.pdb: