Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSGSQLHSATAAATMTSTAVSSASAEPSPPTGSSSTAIMSSSLTALAQQQQRLLVSSLLPCDGPLQYVDPTADGLPGTSPSCSEEHNSCTRPDAAQQDRAVSMRVPHATAHERSEHASNDPGPSPPFLPAAEERLTGRSPDAADATSHLDHDGAADCATSSSSTATASTISMHITETCVLKDTLPAPPMQDQSSSEGGVDATAARYSSSPLVNAGSDATLTMTGMRSATPSSPLKAQSNSLQPKESAKVAIDAVSRGSAGQQPSASGGLTTMMTTATSTNTTTAARGLPRTMLPDTLSACTTMKGSETLSSQAGSLMLPLSDGTPPSCSMKAATAALSGPRREKRRPPSLFSSSPATTSLTVATRPVLITPAVSRQEDRSLTTSVTQTASSVSQTNQPLHGQVQRPPAPLPRTPGAPSPLSSTLVSSALPTHGDGGVEEDADGERLSTLVVRRDLHELAATRLPMNPASYAPVHVKLPAVLPTTSPPLRSGRPAHPIAAQQHRAACESQGGLTGSSGASTAAHHSAAGATTPAAIAPVSTPSSVTMFHYGSFQAGYASTAAAGGAVTPNATPLLSNSSLCGFANYCGAGSLGSGSAPAASLSTATSTACANRLQPPSAARLSVTGMGGGGGGAVAGVLSPLSLSGAAATARTVRRRAPPPLLFRLRSPVGPAPPSTAVSANDTSGEMTSPGSVAPPSSASRTATSAAAAAASAGACSSVLTTPPLNSRSMGMTMNSGSASDLASTMADRPARGSGCNPPATPARSGPFARAHGSVAQNLNTFSSSTRSGGLVRISHDRRTLVAGMFRVSRDGCLTVRNMLLLNPTRIDAGSATGGAAGPGCTCGSFMGSSTTGTGGGGSRSRPLQLLHPQRSATNYSPVSSNGGLVGRMQLLGPGGGNDLGGGGGAGGGAGGLGPMTPNTTGSDWYSPHAYHGGGGGSGNTRNDXXXXGGKRGGANTTANASFTLFSTSMDTPFSPITYSMDSQRLALPSPLGVHHDRAGAAAGPPPQLLGTVCENTATSHFLGASGSPHQQPQPHDGLLPGSHHVTETNASPTRNLGFGMVTGGAAAAAQQQVATPNSTTALGRPSGGSGGNICHAQLRRQASNGWLPGALGATNTASPPPFAAAGGAGGMLNAGAFTDTDTANSLLLPYADIPTYRGGIASATAGSRVDSPSGHTNPGGFRTTTTAATATTAAAPMMGGSGATQNTSFPPLPPNVVRLRDLDILSTTCGEGASATVFVAIHKPTGRRLAVKRVDLSPLCLGCSSPFLRSGAVSSGRINQLQRIVVRELQVLHLTYRSPFMVKVYNAFFLAEVAALDIVMEFMHYGSLDHLADCLQQHARMVRGSQQERHRLLTGDDDQDDGDGGGHSGRCGSVHGGSPSVPPLLCDAPEAPQVTEGFLKDTSAAGVGRSGTGGDTERRPSITSTSPKLLDSQRTLAERAPPSAPRPCISRVVDTTGSSDVDSIACGSGGVPCHPLTGGYKHIYGSNDSLLLDSYSVKSDCGTDDSESDDGSGLVEEPLGVTERLVAVVGEQLLRGVRDMHSRGYIHQDIKPGNVLVNEHG----VVKLSDFGLSQRCDSTGLGIKNDMLTYVPPPSVAPAQSITPLQSPSLTVLPLTGARGRRAPFVWHAQRGSIGAGISGQLGSGMVGTTPPEMGSSAEGLVFSSTTNSLLAQRDGMDVLEAESTSSEEGPGEWDATRRGRSGLNPSSSSSDDAGDCCGTDKYMSPERQRGEPYGKPADIWAVGVTLAEFAVGEYPYDLKDVIDEFDRVSRMDKPVDVLQFNKHRAVPLGTVFADFCRLATLPTASQRPTAQELLEHPFFKQWHRPFNLKDYLAARVPVPSNRLKEDYLAKQRERPPEGQQPAGPPG |
4NIF Chain:A ((5-270)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VFSDGYVVKE-TIGVGSYSECKRCVHKATNMEYAVKVIDKSK------------------------RDPSEEIEILLRYGQHPNIITLKDVYDD--GKHVYLVTELMRGGELLDKIL---RQ------------------------------------K------------------------------------------------------------------------------------------------------------------------------------------------FFSEREASFVLHTIGKTVEYLHSQGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAENG-----------------------------------------------------------------------------------------------------------------------------------LLMTPCY---FVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIGSG--KFTLSGGNWNTVSETAKDLVSKMLHVDPHQRLTAKQVLQHPWVTQK-------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NIF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1193 -82655 -69.28 -319.13
3D Compatibility (PKB) : -69.28
2D Compatibility (Sec. Struct. Predict.) :
1D Compatibility (Hydrophobicity) :
QMean score : ?
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