Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIQKHAIPILEFDDNPQAVIMPNHEGLDLQLPKKCVYAFLGEEIDRYAREVGANCVGEFVSATKTYPVYVINYKGEEVCLAQAPVGSAPAAQFMDWLI-GYGVEQIISTGTCGVLAD-IEENAFLVPVRALRDEGASYHYVAP-CRYMEMQPEAIAAIEEVLEDRGIPYEEVMTWTTDGFYRETAEKVAYRKEEGCAVVEMECSALAAVAQLRGVLWGELLFTADSLADLDQYDSRDWGSEAFNKALELSLASVHHL
4MAR Chain:B ((28-254))------------------------SAPPGAVAEAILLPGDPLRAKYIAENFLENPVL--YNQVRNMFGYTGTYKGKRVSVQGTGMGIPSASIYIHELVQFYGCKTLIRVGTAGAITERLKLRDLVIAQAACTDSSINNLRFAGQNYAPIATFDLLRRAYEQAQSRGMPVHVGNVLSTDTFYHDQPNPYQLWAQFGVLAVEMEAAGLYTLAAKFGVQALCILTISDHLITGEKTTPQERQ-ETFDQMIEVALETI---


General information:
TITO was launched using:
RESULT:

Template: 4MAR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1275 -69799 -54.74 -311.60
target 2D structure prediction score : 0.51
Monomeric hydrophicity matching model chain B : 0.72

3D Compatibility (PKB) : -54.74
2D Compatibility (Sec. Struct. Predict.) : 0.51
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.540

(partial model without unconserved sides chains):
PDB file : Tito_4MAR.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4MAR-query.scw
PDB file : Tito_Scwrl_4MAR.pdb: