Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMETQDYAFQPGLTVGELLKSSQKDWQAAINHRFVKELFAGTIENKVLKDYLIQDYHFFDAFLSMLGACVAHADKLESKLRFAKQLGFLEADEDGYFQKAFKELKVAENDYLEVTLHPVTKAFQDLMYSAVASSDYAHLLVMLVIAEGLYLDWGSKDLAL---PEVYIHSEWINLHRGPFFAEWVQFLVDELNRVGKNREDLTELQQRWNQAVALELAFFDIGYDV
2GM8 Chain:C ((11-219))------------VTGELRRRADGIWQRILAHPFVAELYAGTLPMEKFKYYLLQDYNYLVNFAKALSLAASRAPSVDLMKTALELAYGTVTGEMANYEALLKEVGLSLRDAAEAEPNRVNVSYMAYLKSTCALEGFYQCMAALLPCFWSYAEIAERHGGKLRENPVHVYKKWASVYLSPEYRGLVERLRAVLDSSG---LSAEELWPYFKEASLYELEFWQAAYE-


General information:
TITO was launched using:
RESULT:

Template: 2GM8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 916 -107850 -117.74 -523.54
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain C : 0.68

3D Compatibility (PKB) : -117.74
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.516

(partial model without unconserved sides chains):
PDB file : Tito_2GM8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2GM8-query.scw
PDB file : Tito_Scwrl_2GM8.pdb: