Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSIYNNITELIGQTPIVKLNNIVPEGAADVYIKLEAFNPGSSVKDRIALSMIEKAEQDGILKLGSTIVEATSGNTGIGLSWVGAAKGYKVVIVMPETMSVERRKIIQAYGAELVLTPGSEGMKGAIAKAQEI-AAERDGFLPL-QFDNPANPEVHERTTGAEILAAFGKDG-LDAFVAGVGTGGTISGVSHALKSE--NSNIQVFAVEADESAI----LSGE--KPGPHKIQGISAGFIPDTLDTKAYDGIVRVTSDDALALGREIGGKEGFLVGISSAAAIYGAIEVAKKLG-TGKKVLALAPDNGERYLSTALYEL
1D6S Chain:B ((3-311))--IYEDNSLTIGHTPLVRLNRI---GNGRILAKVESRNPSFSVACRIGANMIWDAEKRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWE--DTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALF--


General information:
TITO was launched using:
RESULT:

Template: 1D6S.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1788 19577 10.95 65.91
target 2D structure prediction score : 0.64
Monomeric hydrophicity matching model chain B : 0.87

3D Compatibility (PKB) : 10.95
2D Compatibility (Sec. Struct. Predict.) : 0.64
1D Compatibility (Hydrophobicity) : 0.87
QMean score : 0.504

(partial model without unconserved sides chains):
PDB file : Tito_1D6S.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1D6S-query.scw
PDB file : Tito_Scwrl_1D6S.pdb: