Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPEQPKSGFFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEGQLLVADIGVDATKTIITNLTERTARGDLIYS---HSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDASESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETEK
5L3R Chain:A ((35-290))-----------------------------------------------------------------------------------------------EPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMG----KPDQQLVKIVHDELVKLMGGEVSELQF-AKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLN------PTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPF--------------


General information:
TITO was launched using:
RESULT:

Template: 5L3R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1276 -23909 -18.74 -96.41
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.74

3D Compatibility (PKB) : -18.74
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.674

(partial model without unconserved sides chains):
PDB file : Tito_5L3R.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5L3R-query.scw
PDB file : Tito_Scwrl_5L3R.pdb: