Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSIAFVGVSAVPPLERQKQRLANMDPSVYAVFEECRYKSLLAICHLARIIDAAMRGLDESTQVPASQPCEDTSHHDCALRSAANADREEPVGRPIADPTISRGSNEDLPLFIPLMDDNSDVSFCSMLHVEAESSSNASGLGYLSENAAKERSKQSTDMKATSHAALGNRERDVALFPHLNGHWECGIFGGKRVYIDTGGLYLGRGATALVYEGWMVVTDAMDGSEVCLAKVPVAIKEVTYNAKD-RRLHDLYELAVNLRLNMVHPGIVHSYYAGTYMPRLAGFRSAEKAMVYAHLVLARSVTGSVADVLKRSGPFPESEIKRCMTEILSALQCVHEDHNCVHNDVKPHNILIFDDSSAYYAEFKYQIIDLTDIAPATPIEDVLRDLA-----------AERKQQQNIFSERGTVMYMSPESCLGLGTLTSNDVWSLGITAFHMATGTLPWRPLERQYPSMILNGYRRKFTLRSLVDMHVNDAFGASGSCYPTGTDNPLHADSDGKPRARFHASSAPGSRATGGASCTSQVFCDQYKGFGPILDMLDEVSVSSEFRSFLEQCLTENPVK---RPTCRQLRSHPFVKDVTVASQH
4LQQ Chain:A ((107-453))------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VKVIGKGAFGEVRLVQKKDT----G-------KIYAMKTLLKSEMYKK---------------SDSPWVVSLYYSFQ-----------DAQYLYLIMEFLP--GGDLMTMLIRWQLFTEDVTRFYMAECILAIETIHKL-GFIHRAIKPDNILIDIRGH-------IKLSDFGLSTGFHKTHDSNY---LTMSNRQQIQTWRKSRRLMAYSTVGTPDYIAPEIFLYQGYGQECDWWSLGAIMYECLIGWPPFCSETPQETY------R------KIMN---------------------------F-------------------------------EQTLQFP---DDIHISYEAEDLIRRLLTHADQRLGRHGGADEIKSHPFFRGVD-----


General information:
TITO was launched using:
RESULT:

Template: 4LQQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1114 -39500 -35.46 -156.75
target 2D structure prediction score : 0.52
Monomeric hydrophicity matching model chain A : 0.61

3D Compatibility (PKB) : -35.46
2D Compatibility (Sec. Struct. Predict.) : 0.52
1D Compatibility (Hydrophobicity) : 0.61
QMean score : 0.357

(partial model without unconserved sides chains):
PDB file : Tito_4LQQ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4LQQ-query.scw
PDB file : Tito_Scwrl_4LQQ.pdb: