Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSLHGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEY-NNKVQLVGLDEESSEFICRN---TFDHPYPTTKLMWIPDTKGVYPDLLAT-SGDYLRVWRVGETETRLECLLNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHHPLLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIEDPILAYTAEGEINNVQWASTQPDWIAIC-YNNCLEILRV
5EMK Chain:B ((36-335))---------------ERQLEAARYR--SDGA-LLLGASSLS-GRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG-----ILVASDSGAVELWELDENETLIVSKFC---KYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLS-----------SYRAHAAQVTCVAASPHK--DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG-TVSLVDTKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-----LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV


General information:
TITO was launched using:
RESULT:

Template: 5EMK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1788 1061 0.59 3.61
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain B : 0.68

3D Compatibility (PKB) : 0.59
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.395

(partial model without unconserved sides chains):
PDB file : Tito_5EMK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5EMK-query.scw
PDB file : Tito_Scwrl_5EMK.pdb: