Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDGAMQGSYATALLKQQQLPESFQFYFKQKQHLSNTQELHQLHELVRPRLKIAIVTETWPPEINGVALSLLQLCQGLQKQGHKILLVRPEQKAKCHDFLPEQECLVMSQAIPKYPTLQFGWPQYLKVSKAFEKFVPDVVHIVTEGPLGLTAMQAAKAKDIPVSSGFHSPFQDFSRFFDLAFLVKPIQKYLCWFHNNTQVTCVPSKDTEEALRG-FGITCPLVVVGRGVDTTRFSPKHR--SENLRQQWGVDSDTRVMLYVGRLSPEKEVQLIVESYAAMQNIQQQKTKLVVVGDGPDLARLKALPEAK--NVIFTGSLCGHDLAVAYASADVFVFASQ-------VETFGNVVLEAMASGLPVIAYDYACAHQYLIHGVNGWLSPLGHKNHFIQQIYQLPS-IQQLREMGIQACHKV-QQSGWQLPVQQLEQAFYQVVKELSADFT
3OKP Chain:A ((4-381))------------------------------------------------SRKTLVVTNDFPPRIGGIQSYLRDFIATQDPE--SIVVFASTQNAEEAHAYDK-TLDYEVIRWPRS-VMLPTPTTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGWSML-------PGSRQSLRKIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAA-RPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTP-ATGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWSWEIMGERLTNILQSEPR-------


General information:
TITO was launched using:
RESULT:

Template: 3OKP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2022 -102567 -50.73 -281.78
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : -50.73
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.504

(partial model without unconserved sides chains):
PDB file : Tito_3OKP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3OKP-query.scw
PDB file : Tito_Scwrl_3OKP.pdb: