TITO

Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)

Input alignment information:

Query sequence

MSGLQEEYLQHQTKIEQLRLSIQYIRWYLVSLILLCLISAIIFFCYFTSYITNFIWSIGFTILTLTCLLFVPKLLTHYRDIHFIKKTDLVLQGICLASGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRYFYLLFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKISQLLFKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQKVRERTYDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEITFFDQQKQTQNTPLHLKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVISRDPKTNKALRMVGMTRDIHQEKKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSKSELLSQQLFNITINQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHINAVKDEYNQIINYIGFARDLTEQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPSYSFKNLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAIIYEISPIHP----NIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQALSEAKRLGGNTISYYCNKTTNPY-KTADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGFEALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKAGYADVRVSVNIVAQQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISIALDDFGTGYSSLAYLTEYPIDVLKIDQAFVSKIGDQ-KQEAIVNAMIAMGKSMGLKLVAEGVETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQTNTHI

4RNF Chain:A ((1-430))

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAYYDALTHLPNRTLFQDRLHTALQQAERNGQWVVLMFLDLD-----NDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAIQVAELILGRLARPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNNFQFYQAEMNARALERLELESDLRRALELGEFVLHYQPQFTGDGRRLTGAEALLRWQHPRRGLVPPSEFIPVLEEIGLVAQVGDWLLAEACKQLRSWHKAKVRVPKVSVNLSARQFADGQLGERIAAILYETGIPPACLELELTESILMSDVAEAMQILSGLKRLGLAIAVNNFGTGYSSLNYLKQFPIDVLKIDRSFVDGLPHGEQDAQIARAIIAMAHSLNLMVIAEGVESQAQLDFLREHGCDEVQGYLFGRPMPAEQFGMLYAS----

General information:

TITO was launched using:	RESULT:
Template: 4RNF.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output	Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2064 -32253 -15.63 -76.97 target 2D structure prediction score : 0.66 Monomeric hydrophicity matching model chain A : 0.64 3D Compatibility (PKB) : -15.63 2D Compatibility (Sec. Struct. Predict.) : 0.66 1D Compatibility (Hydrophobicity) : 0.64 QMean score : 0.529

(partial model without unconserved sides chains):
PDB file : Tito_4RNF.pdb:

(Unconserved sides chains are recalculated) :
Sequence: align-4RNF-query.scw
PDB file : Tito_Scwrl_4RNF.pdb: