Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMANLKEIRAKVASIKSTQKITRAMQMVAASKMRRAQERMAQGRPYADNMRRVIAHLVQANPEYKHRYMVDRPVKRVGYIIVSSDRGLAGGLNINLFKKVVQHVKAQQEQSIEVQFALIGQKAVSFFK--N-YGGKVLGATTQI-GDAPSLEQLTGSVQVMLDAFDKGELDRIYLVSNGFVNAMTQKPKVEQLVPLAPAEEGDDLNRTYGWDYIYEPEAEELLNGLLVRYIESMVYQGVIENVACEQSARMVAMKAATDNAGQLIKDLQLIYNKLRQAAITQEISEIVGGAAAV
2XND Chain:G ((1-272))-ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIK-----TP---E------LIIGVSSDRGLCGAIHSSVAKQMKSEAANL----KEVKIIGVGDKIRSILHRTHSDQFLV--TFKEVGRRPPTFGDASVIALELLNS--GYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISS-------AESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL


General information:
TITO was launched using:
RESULT:

Template: 2XND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain G - contact count / total energy / energy per contact / energy per residue : 1093 -39371 -36.02 -152.01
target 2D structure prediction score : 0.73
Monomeric hydrophicity matching model chain G : 0.75

3D Compatibility (PKB) : -36.02
2D Compatibility (Sec. Struct. Predict.) : 0.73
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.427

(partial model without unconserved sides chains):
PDB file : Tito_2XND.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2XND-query.scw
PDB file : Tito_Scwrl_2XND.pdb: