Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTKSLILVSHGRFCEELRGSTEMIMGPQDNIYTVALLPEDGPEEFTAKFEAVIEGL---DDFLVFADLLGGTPCNVVSRLIMEGRDIDLYAGMNLPMVIEFINASLT--G-ADA--DYKSRAAESIVKVNDLLAGFDDDEDE
1PDO Chain:A ((2-130))-TIAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVETLMARDDDPSFDELVALAVETGREGVKALK------------


General information:
TITO was launched using:
RESULT:

Template: 1PDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 578 -54092 -93.58 -447.04
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain A : 0.76

3D Compatibility (PKB) : -93.58
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.546

(partial model without unconserved sides chains):
PDB file : Tito_1PDO.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1PDO-query.scw
PDB file : Tito_Scwrl_1PDO.pdb: