Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTDSAIQIIHQNIHQRQSIGQLVEPAPNTDQLELAFQAALTAPDHHRLKPTRFVIVSGD-QRAAFGEVLAKALVDLGESDPAQLERVKQHPFRAPLLILALTQLQDHPKVPHFEQILSTGAAVQNLLLSLQAQGFSTMWRSGAVVE--SNWLKQHLGLQPHDLISGIIYVGTAAKAIAPRADIDSKEFVKVWQA
3M5K Chain:B ((5-167))-----ENQTLETILNRKSVRKYKDRPVEKEKIDKLIRAGMAAPSSRDRRPWEFIIVTDRKALDTMAEGLP----------------FARMLKETRQAIVVCGDTIK----SSNAWFLDCSAASQNLLLAAESMGLGAVWTAVYPYPDRIEIVRKELRLPDHIMPLNVIPVGYPMQKETPKNKYNVQQI------


General information:
TITO was launched using:
RESULT:

Template: 3M5K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 757 -55016 -72.68 -343.85
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain B : 0.73

3D Compatibility (PKB) : -72.68
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.413

(partial model without unconserved sides chains):
PDB file : Tito_3M5K.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3M5K-query.scw
PDB file : Tito_Scwrl_3M5K.pdb: