Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKNKTIILGGFTEMKKAKLFGLGAVALAAGLFLGACGNNGSTDSSGGKSSSDTTTAALITDTGGVDDRSFNQSAWEGLEKWGKDQGLSRGNDGFQYFQSSNESDYIPNIDQALNAGFKTIFGIGYKLKPAIQEQATNNTGTNFVIIDDVIDGLDNVVSATFKDNEASYLAGVAAAYTTETNVVGFIGGVKGEVIDRFDAGFKAGVDAGAKELGKEIKVLNQYAGDFSAPDKGRSIAQGMYAQNADIIFHASGGTGNGVFQEAKSLNESGDKKVWVIGVDRDQSDEGEYTLNGEKKNFTLTSTLKAVGTVVEDLAQKSADGKFPGGEHTVYGLKEDGVGLTE-GQLSDEAKKAVDEAKEKIISGDVKVPETPEEN---------------------------------
3S99 Chain:A ((26-355))------------------KLKVGFIYI------------GPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEG-------------------------ADAERSIKRIARAGNKLIFTTSFGYMDPTVKVAKKFPDVKFEHATGYKTA-DNMSAYNARFYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVVQGINSFMLGAQ----SVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST--------AAIQVAHDRGIKAFGQASDMIKFAPDT--------QLTAVVDEWGPYYIDRAKAVLDGTWKSQ-NIWWGMKEGLVKMAPFTNMPDDVKKLAEETEARIKSGELNPFTGPIKKQDGSEWLKAGEKADDQTLLGMNFYVAGVDDKLP


General information:
TITO was launched using:
RESULT:

Template: 3S99.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1782 -61818 -34.69 -208.84
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : -34.69
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.385

(partial model without unconserved sides chains):
PDB file : Tito_3S99.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3S99-query.scw
PDB file : Tito_Scwrl_3S99.pdb: