Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMMGSKKQEEIMKITIPKNFILGAASSAWQTEGWKGKKEGQDSFIDSWYKNEHFVWHNGYGPAVATNFMEQYQQDVDLMKSIHLTHYRTSINWARFFTDYENCIVDEEYAQHISEMIDSLIEADVEPMICLEHYEVPAFLLEKYDGWSSRKVVDFYAKYAQIAFDRYGDRVKNWFTFNEPIVPQTRCYLDAVRWPHEQNTKKWMMWNYHKVLATAKAVEIYRSGNYGGRIGCILNPEMVYARSNSPEDQKAAYMYDLFYNRVFFDPMVKGYYTEEFLELCQKQSIYFDPATEDLETIQHHTVDFLGINQYYPKRVRAPRYQWNEETPFHPERYYEVFDLPGKKMNNSRGWEIYPKIMYDIAMYLKENYH-NIPWLITENGMGREYEEQYMDEKGIVQDDYRIEFIGQHLHYLIKATEEGANCEGYMLWAFTDCVSPMNAFKNRYGLVRIELNDERSRTLKKSASWYQTLIDKRELDLPDEIYK
5GNX Chain:A ((8-456))--------TARSYRFPEGFLWGAATAAYQIEGSSMADGAGESIWDRFSHTPGNM-KDGDTGDVACDHYNRWREDIELMKRLNLQAYRFSVSWSRVIPQGRG-AINPKGLAFYDRLVDGLLEAGIEPLATLYHWDLPAALDDR-GGWLNPDIADWFADYGQVLFEKFKGRVKTWGTINQPWVIVDGGYLHGALAPGHRSAYEAVIAGHNVLRAHGAAVRRFREVGE-GQIGIVLNIEPKYPASDKPEDEAARRRAEAQMNRWFLDPLMGRGYPEELTDVYG-AAW-REFPKEDFELIA-EPTDWMGLNWYTRAVPENAPDAWPTR--SR-------PVRQTQHAHTETGWEVYPPALTDTLVWLSEQTGGKLPLMVTENGSAWYDPP-H-AIDGRIHDPMRVHYLQTHIKALHDAIGKGVDLRGYMAWSLLDNLEWSLGYSKRFGIVHVNFAT-QERTIKDSGLLYAEVIKTHGDVL------


General information:
TITO was launched using:
RESULT:

Template: 5GNX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2690 -151412 -56.29 -337.97
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain A : 0.76

3D Compatibility (PKB) : -56.29
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.480

(partial model without unconserved sides chains):
PDB file : Tito_5GNX.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5GNX-query.scw
PDB file : Tito_Scwrl_5GNX.pdb: