Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--MMDKRIFVEKKADFQ-VKSESLVRELQHNL----GLSSLKSIRIVQVYDVFD--LAEDLFAPAEKHIFSEQGTDHVLDEVSVQADLANYAFFAIESLPGQFDQRAASSQEALLLLGSSSDVTVNTAQLYLVNKDIDATELEAVKNYLLN------PVDSRFKDITTGIAKQEFSESDKTIPKLTFFESYTAEDFARY-KAEQGMAMEVDDLLFIQDYFKSIGRVPTETELKVLDTYWSDHCRHTTFETELKHIDFSASKFQKQLQSTYDKYIAMREELGRSEKPQTLMDMATIFGRYERANGRLDDMEVSDEINACSVEIEVDVDGVKEPWLLMFKNETHNHPTEIEPFGGAATCIGGAIRDP--------LSGRSYVY--------QAMRISGAGDITAPISETRAGKLPQQVISKTAAHGYSSYGNQIGLATTYVREYFHPGFVAKRMELGAVVGAAPKGNVVREKPEAGDVIILLGGKTGRDGVGGATGSSKVQTVESVETAGAEVQKGNAIEERKIQRLFRNGNVTRLIKKSNDFGAGGVCVAIGELADGLEIDLNKVPLKYQGLNGTEIAISESQERMAVVVRPEDVDTFVAECNKENIDAVVVATVTEKPNLVMHWNGETIVDLERRFLDINGVRVVVDAKVVDKDVKLPEERQTSAETLESDTLTVLSDLNHASQKGLQTIFDCSVGRSTVNHPLGGRYQLTPTEASVQKLPV---QHGV-THTASVIAQGFNPYVAEWSPYHGAAYAVIEATARLVAAGANWSKARFSYQE-YFERMDKQAERFGQPVAALLGSIEAQIQLGLPSIGGKDSMSGTFEEL--TVPPTLVAFGVTTADSRKVLSPEFKAVGENIYYIPGQALSAE-IDFDLIKKNFAQFEASQADHKVTSASAVKYGGVVESLALATFGNYIGAEVTLPELKTALTAQLGGFVFTSPEEIAGVEKIGQTKADFTLTVNGVKLDGHKLDSAFQGTLEEVYPTEFTQAKELEEVPAVASDVVIKAKEKVEKPVVYIPVFPGTNSEYDSAKAFEKEGAEVNLVPFVTLNEEA--IVKSVETMVDNIDKTNILFFAGGFSAADEPDGSAKFIVNILLNEKVRVAIDSFIARGGLIIG-ICNGFQALVKSGLLPYGNFEDANNTSPTLFYNDANQHVAKMVETRIANTNSPWLAGVQVGDIHAIPVSHGEGKFVVTAEEFAELRDNGQIFSQYVDFNGKPSMDSKYNPNGSVHAIEGITSKNGQIIGKMGHSERYEDGLFQNIPGNKDQHLFASAVKHFTGK
4W8J Chain:A ((33-1178))YTPIDISLSLTQFLLSEFVPGAGFVLGLVDIIWGIFGPSQWDAF-LVQIEQLINQRIEEFARNQAISRLEGLSNLYQIYAESFREWEADPTNPALREEMRIQFNDMNSALTTAIPLL-AVQNYQVPLLSVYVQAANLHLSVLRDVSVFGQRWGFDAATINSRYNDLTRLIGNYTDYAVRWYNTGLERVWGPDSRDWVRYNQFRRELTLTVLDIVALFPNYDS-RRYPIRTVSQLTREIYTNPVLEN-FDGSFRG---SAQGIERSI---------------RSPHLMDILNSITIYTDAHRG----YYYWSGHQIMASPVGFSGP--EFTFPLYGTMGNAAPQQRIVAQLGQGVYRTLSSTLYRRPFNQQLSVLDGTEFAYGTSSNLPSAVYRKSGTVDSLDEIPPQNNNVPPRQGFSHRLSHVSMFRSGFVSIIRAPMFSWIHR--------------SAEVNNII-----ASDSITQIP-----------------------------AVKGN---------FLFNGSVIS--------GPG--------FTGGDLVRLNSSNIQNRGYIEVPIHFPSTSTRYRVRVRYASVTP---------------------------------IHLNVNWGNSSIFSNTVPATATSLD-NLQSSDFGYFESANAFTGNIVGVRNFSGTAG--VIID-RFEFIPVTATLEAEYNLERAQKAVNALFTSTNQLGLKTNVTDYHIDQVSNLVTYLSDEFS--LDEKRELSEKVKHAKRLSDERNLLQDSNFKDINRERGWGGST--------------GITIQGGDDVFKENYVTLSGTFDESYPTYLYQKIDESKLKA-------FTRYQLRGYIEDSQDLEIYLIRYN-AKHETVNVPGTGSSAHHSHHFSLDIDVGSTDLNEDLGVWVIFKIKTQDGHARLGNLEFLEEKPLVG------------------------------EALARVKRAEKKWRDKREKLEWETNIVYKEAKESVDALFV--------NSQYDQLQA------DTNIAMIHAADKRVHSIREAYLPELSVIPGVN-------------------AAIFEELEGRIFTAFSLYDARNVIKNGDFNNGLSSWNVKGHV---DVEEQNNQRSVLVVPEWEAEVSQEVR---VSPGRGYILRVTAYKE-----GYGEGSVTIHEIEN---NTDELKFSNPVGY---VTKELEYFPET--------------------------DKVWIEIGETEGTFIVDSVELLLMEE


General information:
TITO was launched using:
RESULT:

Template: 4W8J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 5007 214685 42.88 220.42
target 2D structure prediction score : 0.42
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : 42.88
2D Compatibility (Sec. Struct. Predict.) : 0.42
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.170

(partial model without unconserved sides chains):
PDB file : Tito_4W8J.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4W8J-query.scw
PDB file : Tito_Scwrl_4W8J.pdb: