Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence --------------MREKMR-FPTLVFDIET-----------LTDLKAGAHLYHLDLPEADVEQALTKIRRQESGMDFQRLPLHEIVCISGLW-------IDESGFRLFSFSREHYSEAEILQKFLSIFDKRHPTLVSWN-------------GSQFDLPVILFRAMYHGLS---APGLFDQGELDSQKR---------FNNYQNRY--HHRHIDLMDVMAMFNGRNFQKLDD-----------VACILGLPGKRGE---SGYHVPEY-VRTEQWLKLTSYCE---GDVLNTWFIYLR--------WLLLKGQMNVDEHNHWISSSIEYLQTMPQQADFLEV-WQ--------------RTSKHTEFTSHYFNPLNF 1YT3 Chain:A ((1-375)) MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKIS--AELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLLQEYPQ

General information: TITO was launched using: RESULT: Template: 1YT3.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1268 -16374 -12.91 -59.76 target 2D structure prediction score : 0.46 Monomeric hydrophicity matching model chain A : 0.66 3D Compatibility (PKB) : -12.91 2D Compatibility (Sec. Struct. Predict.) : 0.46 1D Compatibility (Hydrophobicity) : 0.66 QMean score : 0.146

(partial model without unconserved sides chains): PDB file : Tito_1YT3.pdb: (Unconserved sides chains are recalculated) : Sequence: align-1YT3-query.scw PDB file : Tito_Scwrl_1YT3.pdb: