Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSKIEIKNLTFGYDSQGTLLFEQANLNFDTQWKLGLIGRNGRGKTTLLNILQNK-LPY-QGQV-IHQ--------QEFAYFPQQTKDKERLTYYVLNDIT-------------DFEIW----EIERELQLMQTDPEILWREFSTLSGGEKTKVLLALLFVDDTHFPLIDEPTNHLDISGRKQVAAYLKKK---KQGFIVVSHDRGFIDEVVDHVLAIEKSQLELYQGNFSIYEEQKKLRDEFEMAQNEKLKKEVSRLKKTAAEKAEWSRSREGDKTKKQVGFIDTESRRVNKGAVGADAARTMKRSKAIVNRMETQISEKEKLLKDIEYIDSLTMNSQASHHKRLLSVEDLQLGYENLLFEPIHFTIEPHQRVAISGPNGAGKSSIIHYLLGAFNGKVIGEKYQPKHLSISYASQNYE--DNRGTLAEFAEKN---QVDYQAFLNNLRKLGMERDVFHNKIEQMSMGQRKKVELAKSLSQPAELYTWDEPLNYLDVFNQEQLEQLILNV----KPAMLLVEHDQTFLDKVSTEIISLERI
1YQT Chain:A ((25-476))------EDCVHRYGV--NAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG-EIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSD-IIHVVYGEPGVY-GIFSQPKGTRN---------------GI---NEFL--RGYLKDE--NVRFR----------------------PYE-IKFT-----------KTG------ER---VEI-----ERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP-TEGKIEWD--LTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE--


General information:
TITO was launched using:
RESULT:

Template: 1YQT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1995 57572 28.86 139.74
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : 28.86
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.324

(partial model without unconserved sides chains):
PDB file : Tito_1YQT.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1YQT-query.scw
PDB file : Tito_Scwrl_1YQT.pdb: