Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-------MGIRITGTGLFHPTEIISNEELADSLNAYVEQYNQENAEKIAAGELEELRGSSAEFIEKASGIKRRYVIEKSGILDPTRLRPRLSERSNDELSIQAEWGVIAAKQAMENAGVTAEDIDVVILACSNMQRAYPAVAIEIQSALGIQ-GYAYDMNVACSAATFGLKQAADAIRSG-ARRVLLVNVEITSGHLDY-RNRDCHFIFGDVATASIIEETTTK-TGFEILDIHLFTQFSNNIRNNFGFLNRSEDAVVDDKLFRQDGRKVFKDVCPLVAKIINAQLEKMQLTANDIKRFWLHQANANMNELILKY--VAGKDADLSRTPIILDEFANTSSAGVIIALHRTGHEVDDG------EYGVISSFGAGYSVGSIVVQKHVA--
1MZJ Chain:A ((3-336))GLRVPERRFSRVLGVGSYRPRREVSNKEVCTWI---------------D---------STEEWIETRTGIRSRRIAEP--------------------DETIQVMGVAASRRALEHAGVDPAEIDLVVVSTMTNFVHTPPLSVAIAHELGADNAGGFDLSAACAGFCHALSIAADAVESGGSRHVLVVATERMTDVIDLA-DRSLSFLFGDGAGAAVVGPS-D-VPGIGPVVRGIDGTGLGSLHMSSSWDQYVEDPSVGRPALVMDGKRVFRWAVADVVPAAREALEVAGLTVGDLVAFVPHQANLRIIDVLVDRLGVPEHVVVS----RDAEDTGNTSSASVALALDRLVRS----GAVPGGGPALMIGFGAGLSYAGQALLLPDPPS


General information:
TITO was launched using:
RESULT:

Template: 1MZJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1822 -36993 -20.30 -118.19
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : -20.30
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.543

(partial model without unconserved sides chains):
PDB file : Tito_1MZJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1MZJ-query.scw
PDB file : Tito_Scwrl_1MZJ.pdb: