Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMVTTIGNGGGVVATCGQCGTAFQKLSARFCSRCGARRDIPAAAAVTAAAAARKPKPKEAVVSMPPLPSAGKESVSRPPADGAKGTLRPFDLEKLSEKRSSGGGSVAPPPLTEVSASALEFRDPSEATSITTPKRRASLATAAGGVLSSAVDASLTLSDQQRRREQRASSNYVKDGSLTGPPLASMADRDQLEHVLTSSSQEDAAMGGAAGNGVDRSHVPIPPPEQRPPSTFPLSVALVRRDGGRAAVTDGADFKGASVKTAPTAWPAEAQASTSNGGDTEEAIASLRPSAEEEAQYTAWVTLSPDDLTPEMLQTSNASELRQWRKGSLIGRGTYGSVYLGLL-PDGSFHAVKCVELGNRKAAADHLGALELVSLSREVNMMHRLRHRNLCTFKGVYFDSESACVCMFMEYIGGGSLSA-LVKKFKPLPSSVVRSWTQQLLSGLHYLHSQHIIHRDIKGDNVLVDTTADPATKSQIKLVDFGAARRLTDAVSQSSTVIGTPYWMAPEVVDASGDGSGYSYKADVWSVGCTVAEMLTGRPPWPCKTSAPAAIMMIASATGMPTEIPEEEATPGCLDFMRQCFIRDPEKRPTVQQLLQHPWIQVKME-------------------------------------------------------------
1KOB Chain:A ((23-374))----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------INDYDKFYEDIWKKYVPQPVEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY---------PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKY--EMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETK----KASSVKIIDFGLATKLNPD-EIVKVTTATAEFAAPEIVD----REPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDED-AFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDHSNLTSRIPSSRYNKIRQKIKEKYADWPAPQPAIGRIANFSSLRKHRPQEYQIYDSYFDRKEA


General information:
TITO was launched using:
RESULT:

Template: 1KOB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1370 -28109 -20.52 -97.26
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : -20.52
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.432

(partial model without unconserved sides chains):
PDB file : Tito_1KOB.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1KOB-query.scw
PDB file : Tito_Scwrl_1KOB.pdb: