Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTYEYKSHIYLAETALNVKDLASQTAFYQQVIGLEILSQT-----ET--ESILGLGGK--VLVQLIQA-QE-SGEVREHYGLYHLAILLPTRKALADVLKHLTDLQIPLVGGADHGYSEAIYLEDLEGNGIELYRDKPVSTWDIREDGRIIGVTEALAAQDIYELGERVEPFILAEGTRMGHIHLSVKDSRKSSQFYQKVLGLEDKFSVP-SASWIAAGDY-HHHLAVNEWRGKGLASRKQGLPGLAYYVIEVAHKKELLTIAQRAQEVDAPIKWM----TSSKLEITDSDGIVTRIRLAR
1ZSW Chain:A ((22-298))-SNAMYEIKGHHHISMVTKNANENNHFYKNVLGLRRVKMTVNQDDPSMYHLFYGDKTGSPGTELSFFEIPLVGRTYRGTNAITRIGLLVPSEDSLHYWKERFEKFDVKHSEMTTYANRPALQFEDAEGLRLVLLVSNGEKVEHWE----------TWEKSEV---------PAKHQIQGMGSVELTVRRLDKMASTLTEIFGYTEVSRNDQEAIFQSIKGEAFGEIVVKYLDGPT---EKPGRGSIHHLAIRVKNDAELAYWEEQVKQRGFHSSGIIDRFYFKSLYFRESNGILFEIATD-


General information:
TITO was launched using:
RESULT:

Template: 1ZSW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1381 46161 33.43 177.54
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : 33.43
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.378

(partial model without unconserved sides chains):
PDB file : Tito_1ZSW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1ZSW-query.scw
PDB file : Tito_Scwrl_1ZSW.pdb: