Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDAKMNLKQLAGIEAAKFVKDGMIVGLGTGSTAYYMVEE-IGRRMREEGLRITGVTTSNATKEQAEKLGIPLKSIDEVPVVDLTIDGADEISADFQGIKGGGAALLFEKIVATYSKETIWIVDSSKLVDKLGKFPLPVEVIPYGSQQLLHIFEEKRFQPVLRTDENGEVLTTDGGHYIIDLHLEVIEQPESLATYLDELVGVVEHGLFLNMVSKVVVGSEKGVEILDAIRRK
3KWM Chain:C ((12-204))------LKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNYRDKIK----TVVSSSEDSTRKLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLGNFPLPIEVIPMARSYIARQIVKLGGQPVYR-----EQTITDNGNVILDVYNLKIDNPLKLETELNQITGVVTNGIF------------------------


General information:
TITO was launched using:
RESULT:

Template: 3KWM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1075 13863 12.90 72.20
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain C : 0.74

3D Compatibility (PKB) : 12.90
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.414

(partial model without unconserved sides chains):
PDB file : Tito_3KWM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3KWM-query.scw
PDB file : Tito_Scwrl_3KWM.pdb: