Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKFKKMLTLAAIGLSGFGLVACGNQSAASKQSASGTIEVISRENGSGTRGAFTEITGILKKDGDKKIDNTAKTAVIQNSTEGVLSAVQGNANAIGYISLGSLTKSVKALEIDGVKASRDTVLDGEYPLQRPFNIVWSSNLSKLGQDFISFIHSKQGQQVVTDNKFIEAKTETTEYTSQHLSGKLSVVGSTSVSSLMEKLAEAYKKENPEVTIDITSNGSSAGITAVKEKTADIGMVSRELTPEEGKSLTHDAIALDGIAVVVNNDNKASQVSMAELADVFSGKLTTWDKIK
5KP7 Chain:B ((25-103))------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSKEQVLKIIKKYTREIAPELEDSPLEPTDSLKKLGIDSVNRAEI-IMMVMEDL------SLNIPRIELAG------------AKNIGELADLFAAKL-------


General information:
TITO was launched using:
RESULT:

Template: 5KP7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 278 -36295 -130.56 -459.43
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain B : 0.59

3D Compatibility (PKB) : -130.56
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.59
QMean score : 0.472

(partial model without unconserved sides chains):
PDB file : Tito_5KP7.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5KP7-query.scw
PDB file : Tito_Scwrl_5KP7.pdb: