Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMKMKLLMTSVLSTSLFLVACGGGSSDDGPATTNPSGTPTNNIQNPVVKVEAYTSTNLGSVAAESSILTYKMLGQSGQEVQATSLVFTPNTPPPVGGWPIVVWAHGTTGVADACAPSKAALADSTKDLISKLLAAGYVVVAPDYEGLGTPGIHPFLNVKSEAFSITDAVVAARNYLSQRNLLTSKKWGTVGHSQGGHAALGAAQYANRAQLDYKGTVAVAPASNWGSILVDGEAQVANAPIDIKIGTYAQLDTYTALVTAGIRNTQPSFDYGQVFTSQISSIAAQAENLCSGPLYGAFYEGMSNYAKDHNGTLDGFTRTQPNFMAVPLVKTFLEKDSQPLQVKVTTPIIIYQGIADPTVPKLATDLLISNATVVGTKINSYVTGNWDHGTAMSSNVDNIVGNVQTLLSAQ
3WYD Chain:A ((304-500))-------------------------------------------------------------------------------P--YRLYVPTTYDGTKAFPLVIALHGMGGDENSYFDSY-----QRGAFMIEAENRGYIVACPKG------YVG----------PAERDVMDVIAEVRRDYKIDPDRIYMTGHSMGGYGTWSIAMN---HPDVFAALAPVAGGGNPLG----------------------------------------------------------------------------------------------------------------MANIAHIPQLVVHGDNDKTVPVERSRVMVEAAKKHGTEIKYIEIPGGDHVSVAARTFKDVFDWFDSHKRK-


General information:
TITO was launched using:
RESULT:

Template: 3WYD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1134 -109347 -96.43 -572.49
target 2D structure prediction score : 0.75
Monomeric hydrophicity matching model chain A : 0.58

3D Compatibility (PKB) : -96.43
2D Compatibility (Sec. Struct. Predict.) : 0.75
1D Compatibility (Hydrophobicity) : 0.58
QMean score : 0.491

(partial model without unconserved sides chains):
PDB file : Tito_3WYD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3WYD-query.scw
PDB file : Tito_Scwrl_3WYD.pdb: