Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-----------------------------MITKAEASKWRLSDLEMRETVGTG-TFGRVRLVKHKGT-GQYAALKILKKQEILRM-KQVDHVMAEASLLQEID-HPFIVSMLRGYMDKNRLYILLEYVVGGELFSHLRKA-GKFPNDVSKFYCAEVILAFDYLHNKT--IVYRDLKPENILLD-QDGNIKITDFGFAKRVTERT---FTLCGTPEYLAPEIIQSK---GHNKAVDWWALGILLYEMLVGY-PPFFDDSPMKIYEKILVG------KVLFPRWVDSKARDFIKGLLSLDPTKRLGSLPNGTEDIKNHKYFAEVD---WNVVLSKKIPAPIPVRQHKEGDTHYFDKYPDSPLNSLRTLTPAQQDCFANFCNGQYTDE
1CDK Chain:A ((8-350))KGSEQESVKEFLAKAKEDFLKKWENPAQNTA------H--LDQFERIKTLGT-GSFGRVMLVKHKETG-NHFAMKILDKQKVVK-LKQIEHTLNEKRILQAV-NFPFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHS--LDLIYRDLKPENLLIDQ-QGYIQVTDFGFAKRV-K--GRTWTLCGTPEYLAPEIILS-KGY--NKAVDWWALGVLIYEMAAG-YPPFFADQPIQIYEKIVSGKVRFPS------HFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFA---TTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEI--RVSI--------NEKCGKEFSEF


General information:
TITO was launched using:
RESULT:

Template: 1CDK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1439 -19122 -13.29 -65.94
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain A : 0.80

3D Compatibility (PKB) : -13.29
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.80
QMean score : 0.526

(partial model without unconserved sides chains):
PDB file : Tito_1CDK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1CDK-query.scw
PDB file : Tito_Scwrl_1CDK.pdb: