Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRVRNRKGATELLEANPQYVVLNPLEAKAKWRDLFGNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDLHASDFEGNVMTEYEQKFSNKGQVIYRVEAEF
5UBB Chain:A ((60-169))-------------------------------------GTDCALDCGSGIGRVSKHVLLPVF-NSVELVDMMESFLLEAQNYLQVKGD--ESYHCYSLQEF--TPPFRRYDVIWIQWVSGHLTDKD------LLAFLSRCRDGLKENGIIILKDNVA-------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5UBB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 509 -56432 -110.87 -522.52
target 2D structure prediction score : 0.76
Monomeric hydrophicity matching model chain A : 0.58

3D Compatibility (PKB) : -110.87
2D Compatibility (Sec. Struct. Predict.) : 0.76
1D Compatibility (Hydrophobicity) : 0.58
QMean score : 0.501

(partial model without unconserved sides chains):
PDB file : Tito_5UBB.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5UBB-query.scw
PDB file : Tito_Scwrl_5UBB.pdb: