Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMYSLMSVTEKETSNSLYRQWQILSRLPTGKWIGTRELQEMLEREGIEI---SLRTIQRDLNQIAQRFPIESNKAVPQGWRWQSDAPIQSLPHMTSSQAVTFM-MVEEHLKRLLPP--SLLDEMGPWFDLAKRS--LSTQNNVRQWINRVRI---------VPASQPLIPPVVDRAAQQAIYEGLLQDKQIECVYRARVNQGEDKTYILNPLALVQKGAVIYLICTRHDKTEVQTFALHRFKSAKVLESRALHPVNFDIDHYIDSGALGFRVDYNQPTESIQLTLTMTEQTAKTFYESQ--------------LSKDQTITPIEENIVE-VTATVPFTSQLVWWLRSFGKKLLHIEPVQVHNAVREIEPDSK
3RFY Chain:A ((78-433))-GGILLVANPVIPD--------VSVLISGPPIKD---PEALLRYALPIDNKAIREVQKPLEDITDSLKIAGVKALDSVERNVRQAS-RTLQQGKSIIVAGFAESKKDHGNEMIEKLEAGMQDMLKIVEDRKRDAVAPKQKEILKYVGGIEEDMVDGFPYEVPEEYRNMPLLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRSDGFVVQTGD-PEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADL-KVGDVIESIQVVSGLENLANPSY


General information:
TITO was launched using:
RESULT:

Template: 3RFY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1231 24031 19.52 74.17
target 2D structure prediction score : 0.47
Monomeric hydrophicity matching model chain A : 0.68

3D Compatibility (PKB) : 19.52
2D Compatibility (Sec. Struct. Predict.) : 0.47
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.154

(partial model without unconserved sides chains):
PDB file : Tito_3RFY.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3RFY-query.scw
PDB file : Tito_Scwrl_3RFY.pdb: