Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MSNSTSTPNTGLSYKDAGVDIEAGDALVDRIKSVAKRTTRPEVMGGLGGFGALCKIPKGYEEPVLVSGTDGVGTKLRLALNLNRHDTIGQDLVAMCVNDLLVCGAEPLFFLDYYATGHLNVDVAANVVTGIGKGCELAGCALVGGETAEMPGMYEGEDYDLAGFAVGVVEQSKIIDGSKVKSGDVLIGVASSGAHSNGYSLLRKILDVKNVDLTQVI--DGRPLADVAMEPTRIYVKPVLELCKQV-DVHAMAHITGGGLPGNLPRVLPNGAQAVINEASWEWPELFKLLQREGNVERFEMYRTFNCGVGMVIAVDANDAEKAIEVLNAQGEKAWKIGHIQENAESVEGADEKIRVIFE 5AVM Chain:C ((53-329)) -------------------------------------------------------------EPVLVATTDGVGTKTLLALEAGDVSGLGFDLVNHSVNDLLAQGAEPLFFLDYLAASHLDEGVLAALLASLAEACRAHGIPLLGGETAEMPGVYREGAWDIAGTLVGVVERSRILGPERVREGDALLALPSSGPHTNGYSLIRKVVAGQD--LSAPVPELGESLKEALLRPHRAYLKEFRLLWEAGVELHAAAHITGGGLPENLPRALPPGLGAEVRRGSWPIPPVFPYLQRLGGIPEEEMYRVFNMGLGMVLVLPQEAAEEALKL-----VEGFLVGRVVPGEG--------------

General information: TITO was launched using: RESULT: Template: 5AVM.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1555 -80392 -51.70 -293.40 target 2D structure prediction score : 0.60 Monomeric hydrophicity matching model chain C : 0.77 3D Compatibility (PKB) : -51.70 2D Compatibility (Sec. Struct. Predict.) : 0.60 1D Compatibility (Hydrophobicity) : 0.77 QMean score : 0.465

(partial model without unconserved sides chains): PDB file : Tito_5AVM.pdb: (Unconserved sides chains are recalculated) : Sequence: align-5AVM-query.scw PDB file : Tito_Scwrl_5AVM.pdb: