Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRRFAINGYGEAQDVFEEIDAHPR-EVGSGHVRVEIKAFSVNPYDVALRLGEMKEIRTLKFPYVPGNDGAGIVTEIGSDVTTVHVGDRVAVHA----------------------------VGGTYGEEVVLPSAKVAKIPDKMSWEEAAGMVTPGITAYNLINHLTEIQPTDTVMILGASGAVGSSLIQLLHEKGIRILTSASS-KNEEKVKKLGASAFAAYDKTNPGLQF----A-DQADLVIDATKGSIKGETGIQIMKPGGRYVALNDLPDLD--LRQKK---EGFYESFVPRKEYLDAEAFAGIIKAYQKGAFHVFISMNLSASLKHVIQAHQLVEG-HPPAGKIILSFEK
5K1S Chain:C ((18-360))MKAVVLRSFGEA-GNLKMETM-PMPRPGRGEVLLRVHACGVCYHDVINRRGNLP---RTSVPAILGHEAAGEVIEVGPDTPGWKTGDRAATLQRMSCGDCALCRSGRNSLCKTDNRFFGEELPGGYAQFMVAPVGGLGRVPASLPWNEAATVCCTTGTAVHTVRTRGKVRAGETVLITGASGGVGLSSVQLARLDGARVIAVTSSEAKVQALKEAGADEVIVSRGLDFASDVRKRTQGAGVDVAVEIVGSAT-FDQTLKSMAPGGRVVVVGNLESGMVQLNPGLVIVKELEI---LGAYATTQAELDEALRLTATGGVRQFVTDAV--PLAEAAKAHFRLENRE-VAGRLVLVPP-


General information:
TITO was launched using:
RESULT:

Template: 5K1S.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1768 42156 23.84 139.59
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain C : 0.74

3D Compatibility (PKB) : 23.84
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.505

(partial model without unconserved sides chains):
PDB file : Tito_5K1S.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5K1S-query.scw
PDB file : Tito_Scwrl_5K1S.pdb: