Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTELQDIDFVELSDEEMHLYSRQILLDGWDIEAQEKLKLANVLIVGAGGIGCSSAELLARAGVGKITLIDADTIEISNLQRQIAFGHEDIGRYKAEVLAKRLQKINPYICVEYFNERLDEHNIDKLVEHQDVVLDGCDNFTTRYLVNAACKKHQVALISASAIGFQAQMFMVEG--DSACYECLFPKEQHANEGLRCAESGVLATTPVMIASLQAHHTLLYLGLNRTPLKQKLLLWDGLNMTQRIVSFDKDINCPFCQAS
1ZKM Chain:A ((3-246))-----------MNDRDFMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRCLWPDNQEPERNCRTAGVVGPVVG--VMGTLQALEAIKLLSGIETPAGE-LRLFDGKSSQWRSLALRRASGCPVCG--


General information:
TITO was launched using:
RESULT:

Template: 1ZKM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1339 -145358 -108.56 -600.65
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain A : 0.80

3D Compatibility (PKB) : -108.56
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.80
QMean score : 0.504

(partial model without unconserved sides chains):
PDB file : Tito_1ZKM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1ZKM-query.scw
PDB file : Tito_Scwrl_1ZKM.pdb: