Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAACTARRALAVGSRWWSRSLTGARWPRPLCAAAGAGAFSPASTTTTRRHLSSRNRPEGKVLETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASAAPEKAENPAGHGSKEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSHEDILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVHRETTENIRVTVIPFYMGMREAQNSHVYWWRYCIRLE----NLDSDVVQLRERHWRIFSLSGTLETVRGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWG--TFRFERPDGSHFDVRIPPFSLESNKDEKTPPSGLHW
5HDW Chain:A ((6-127))--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGR-VYEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHM---------------


General information:
TITO was launched using:
RESULT:

Template: 5HDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 487 -11149 -22.89 -96.11
target 2D structure prediction score : 0.51
Monomeric hydrophicity matching model chain A : 0.61

3D Compatibility (PKB) : -22.89
2D Compatibility (Sec. Struct. Predict.) : 0.51
1D Compatibility (Hydrophobicity) : 0.61
QMean score : 0.252

(partial model without unconserved sides chains):
PDB file : Tito_5HDW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5HDW-query.scw
PDB file : Tito_Scwrl_5HDW.pdb: