Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDTDPLVSCENLTSIVNLEHLMTTPVSFHPQAFIELALSRGVLKFGEFTLKSGRVSPYFFNAGLLNDGEALSLLAQGYADKLTQCE-NVDVIFGPAYKGIPFVAATAVALSQTHNKSVPWGFNRKEAKDHGEGGVLVGAAVEGKKVWIIDDVITAGTAIREVVTILKNAGATIAGVLVALDRQERGQGELSAIQEVQKELEIPVHALITMKDLMDYLEAKGEK-EALANMQAYREKYGI
3N2L Chain:A ((29-238))----------------------------YQREFIEFALEKQVLKFGEFTLKSGRKSPYFFNAGLFNTGRDLARLGRFYAAALVDSGIEFDVLFGPAYKGIPIATTTAVALADHHDVDTPYCFNRKE--------NLVGSKLEGR-VMLVDDVITAGTAIRESMELIQANKADLAGVLVAIDRQEKGKGELSAIQEVERDFGCAVISIVSLTDLITYLEQQGNNTEHLEAVKAYRAQYGI


General information:
TITO was launched using:
RESULT:

Template: 3N2L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 918 -61823 -67.34 -309.11
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.83

3D Compatibility (PKB) : -67.34
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.83
QMean score : 0.637

(partial model without unconserved sides chains):
PDB file : Tito_3N2L.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3N2L-query.scw
PDB file : Tito_Scwrl_3N2L.pdb: