Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRIILLGPPGAGKGTQAQLICKRYNIPQISTGDMLRAAIREGTELGLKAKSVMESGGLVSDELIIGLVKERIAQPDCVNGCIFDGFPRTIPQAEALEKE----GISIDHVIEIDVPDEEIVKRLSGRRQHPASGRVYHVVYNPPKVEGKDDETGEDLVQRPDDQEETIRKRLASYHTETEQLVGFYQGRAASGENAPTYDKLDGLRTIEDVQKDLFNILDK
4TYP Chain:B ((1-212))MNIVLMGLPGAGKGTQAEKIVAKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVRERLS------GFLLDGFPRTVAQAEALEEILEEMGRKLEHVIHIDVRQEELMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVAKRLEVNMKQMKPLLAFY-------DSKEVLRNVNGEQDMEKVFKDLRELL--


General information:
TITO was launched using:
RESULT:

Template: 4TYP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 915 -35583 -38.89 -176.15
target 2D structure prediction score : 0.71
Monomeric hydrophicity matching model chain B : 0.85

3D Compatibility (PKB) : -38.89
2D Compatibility (Sec. Struct. Predict.) : 0.71
1D Compatibility (Hydrophobicity) : 0.85
QMean score : 0.517

(partial model without unconserved sides chains):
PDB file : Tito_4TYP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4TYP-query.scw
PDB file : Tito_Scwrl_4TYP.pdb: