Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMFISFEGTEGVGKTTLIRKIHQHFEEQGKQVVLTREPGGTPLAEQIRSMLLAVNHDENMSHDTELLLIYAARAQHLQQVILPALESNKIVLSDRFTDASFAYQCSGRGLSQDKLQLLNQNFVSRM-PEVTFWLDAPIELGMNR-ARERGALDRFEQEKLSFFTKVREGYETLWKAEPERIKRLDATQSPDQVFEQALQYLA
2CCJ Chain:B ((4-196))-FITFEGPEGSGKTTVINEVY-HRLVKDYDVIMTREPGGVPTGEEIRKIVLEGN---DMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKN----NRLDQEDLKFHEKVIEGYQEII----QRFKSVNADQPLENVVEDTYQ---


General information:
TITO was launched using:
RESULT:

Template: 2CCJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 859 -13267 -15.44 -72.49
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain B : 0.82

3D Compatibility (PKB) : -15.44
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.82
QMean score : 0.580

(partial model without unconserved sides chains):
PDB file : Tito_2CCJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2CCJ-query.scw
PDB file : Tito_Scwrl_2CCJ.pdb: