Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDKPIRPEKEELKEKLSPMAYAVTQENATERPFSGKYDDFYEKGIYVDIVSGEPLFSSAEKYDAGCGWPSFSKPITKRQVREKADFSHGM-HRIEVRSKEADSHLGHVFTDGPVDQGGLRYCINSASLKFIPYEK-MDELGYGEFKSLVE
1L1D Chain:A ((8-151))---YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEHDD-FSFNMRRTEVRSRAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPLEQMDAA-GYGALKGEV-


General information:
TITO was launched using:
RESULT:

Template: 1L1D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 721 1846 2.56 13.00
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.84

3D Compatibility (PKB) : 2.56
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.84
QMean score : 0.519

(partial model without unconserved sides chains):
PDB file : Tito_1L1D.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1L1D-query.scw
PDB file : Tito_Scwrl_1L1D.pdb: