Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMVMSDNTKYIFLSPHLDDAIFSCGDYISKLTSEGEIVLVITIFSGYPLSQQLQPSAKQFHKLCNLG-KY-PIEERKKEDRLACERLQCDFRHLS--------YYECLYRKDRNGNFLYRHIYSEL-----K--NEDTLKNDIIKELLMHLDDKCVVYCPLSLGDHVDHVFVNSIGRALEFM-RYKVIYYEDFPYVSDSSM-VSYMGKTKELKMYQEELDEKHYIDRISSILCYKSQILIIWKSVEKLLNNIKELYLRNGA--AYSIRFWIKK
3DFF Chain:A ((8-268))------TRLLAISPHLDDAVLSFGAGLAQAAQDGANVLVYTVFAGAAQPPY-SPAAQRMHTIWGLAPDDDAVLYRRKEDIAALDHLRVAHRHGRFLDSIYRKLPDGRWLTAHVE-G-RQKLAVNDHSPDSDHDLVGEVADDIRS--IIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLWEDLPYAVFKSGAVELPQGFRLGSADVSSVKPEMRSQKFQAVERYSSQMVLLNGSENNLFDRLDEHARQNAPHGGYGETTWPVV


General information:
TITO was launched using:
RESULT:

Template: 3DFF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1227 -33473 -27.28 -139.47
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain A : 0.69

3D Compatibility (PKB) : -27.28
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.69
QMean score : 0.360

(partial model without unconserved sides chains):
PDB file : Tito_3DFF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3DFF-query.scw
PDB file : Tito_Scwrl_3DFF.pdb: