Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKIRIDIPHHPYDIQIEKGCMAQAGQWLRELWQPQKVVIVTDNHVASLYAEKVKLSLEDAGFQVAVFDFLEGEERKNLTTVQKVYEFLVKQGLTR-SDGIVALGGGVVGDLAGFVASTYMRGIHFVQIPTSLTAQVDSSIGGKTGVNTPFAKNMVGTFAQPDGVLIDPLVLETLGKRELIEGMGEVIKYGLIEDPELWALLTGLNGSVE-SILEHAETLIEHSCQVKRKMVVEDELDNGIRLYLNFGHTIGHAIEATAGY-GKVMHGEAVAMGMVQISKIAEEKGLMPAGITQSITEMCQKFGLPVDYEN-WEVDKLYQALTHDKKARGNTLKLVLVPELGSATIHPVSLEEMKDYLVK
5HVN Chain:A ((15-359))--------SPSYNIIVDSVL--DFSHILEY-VTNKQVLVVTNTTVAKLYLTKFLAALVD-DLDVRTCILEDGEQYKSQQSLDKILSTLLENHFTRNSTVLVALGGGVIGDITGFAAAIYQRGIDFIQIPTTLLSQVDSSVGGKTAINHQLGKNMIGAFYQPKVVYTSIEFYKTLPQREYIAGMAEVVKYAFISK-DFYLWLDSNRDKILAKDSVTLIEMVKRSCQIKAQVVAMD---TGARAILNFGHTFGHAIEKCQNYRG-LKHGEAVGVGMAQAIDFSHYLGLISQQQAKDFNDFIVSFGISIDFPNDICQKEFLEAMLLD----NKELKFILIENIGSLSLQKQSKNELEQFLD-


General information:
TITO was launched using:
RESULT:

Template: 5HVN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1795 -80942 -45.09 -243.07
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.80

3D Compatibility (PKB) : -45.09
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.80
QMean score : 0.574

(partial model without unconserved sides chains):
PDB file : Tito_5HVN.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5HVN-query.scw
PDB file : Tito_Scwrl_5HVN.pdb: