Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKLIVSVMPRSLEEAQA-LD-ATRYLDADIIEWRADYLPKEA----ILQVAPAIFEK-FAGRELVFTLRTRSEGGEIDLSPEEYIHLIKEVAQLYQ-PDYIDFEYYSYKDVFEEML-----DFPNLVLSYHNFQETP--ENMMEILSELTILNPKLVKVAVMAHTEQDVLDLMNYTRGFKTLNPEQEYVTISMGKVGKVSRITADVTGSSWSFASLDEVSAPGQISLASMKKIREILDEA
4CNN Chain:B ((16-252))PKIIVSLMGRDINSVKAEALAYREA-TFDILEWRVDHFMDIASTQSVLTAARVI-RDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAI-DSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVLRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVK----PGQIAVNDLRSVLMILHNA


General information:
TITO was launched using:
RESULT:

Template: 4CNN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1189 -7188 -6.05 -32.97
target 2D structure prediction score : 0.64
Monomeric hydrophicity matching model chain B : 0.77

3D Compatibility (PKB) : -6.05
2D Compatibility (Sec. Struct. Predict.) : 0.64
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.510

(partial model without unconserved sides chains):
PDB file : Tito_4CNN.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4CNN-query.scw
PDB file : Tito_Scwrl_4CNN.pdb: