Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTNKKNLGIGGIIVLLIAAYLGLDLSGHKNNPTPSSIPVNQRTETTFSNDGVDTIKAAYERRQSNVQVQGSGRVKAILREDNDGSRHQKFILVLKNG---LSILVAHNIDLAPKIEDLRKGDIVEFNGEYEYNEKGGVLHWTHHDPQNRHENGWLKHNGRIYQ
3KBH Chain:E ((2-122))-----------HTDINFTATASFGGSCYVCKPHQVNISLNGNTSVCVRTSH---FSIRYIYNRVKSGSPGDSSWHIYLKSGTCPFSFICFSTVEVPGSCNFPLEATWH---------------------YTSYTIVGALYVTWSE------------------


General information:
TITO was launched using:
RESULT:

Template: 3KBH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain E - contact count / total energy / energy per contact / energy per residue : 469 -36110 -76.99 -337.47
target 2D structure prediction score : 0.50
Monomeric hydrophicity matching model chain E : 0.62

3D Compatibility (PKB) : -76.99
2D Compatibility (Sec. Struct. Predict.) : 0.50
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.367

(partial model without unconserved sides chains):
PDB file : Tito_3KBH.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3KBH-query.scw
PDB file : Tito_Scwrl_3KBH.pdb: