Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNLIFLPGASGSTTFWHPLIEKLPQQYRAKIIGYPSFGDTPESLEVKSFEDLTNYVVNQIHDESVIIAQSMGGIFAVTAALQKPQLVKGLVLIATSGGINLEP----FN---V--------QDWRE---AYRQA-------FL----KYP-----------DWFI-----TTNANYEEFLSDINIKTLLIWGDNDPVSPVQVGQYLNQKFENSTLYVVKGGDHQLAEKYADEVAVQIKNYLKGLM
4NMW Chain:A ((17-258))CHLVLLHGWGLNAEVWHCIREELGSHFTLHLVDLPGYGRSSGF-GAMTLEEMTAQVAKNAPDQAIWLGWSLGGLVASQMALTHPERVQALVTVASSPCFSAREGWPGIKPEILGGFQQQLSDDFQRTVERFLALQTLGTETARQDARTLKSVVLAQPMPDVEVLNGGLEILKTVDLREALKNVNMPFLRLYGYLDGLVPRKIVPLLDTLWPHSTSQIMAKAAHAPFISHPAAFCQALMTLKSS--


General information:
TITO was launched using:
RESULT:

Template: 4NMW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 991 -81637 -82.38 -414.40
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : -82.38
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.501

(partial model without unconserved sides chains):
PDB file : Tito_4NMW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4NMW-query.scw
PDB file : Tito_Scwrl_4NMW.pdb: