Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMVKELFMKKQNLFLVLLSVFLLCLGACGQKESQTGKGMKIVTSFYPIYAMVKEVSGDLNDVRM-IQSSSGIHSFEPSANDIAAIYDADVFVYHSHTLES---WAGSLDPNLKKS---KVKVLEASEGMTLERVPGLEDVEAGDGVDEKTLYDPHTWLDPEKAGEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKFEKAT--QKTFVTQHTAFSYLAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLKT---LNPLESDPQNDKTYLENLEENMSILAEELK
5JPD Chain:A ((11-289))-----------------------------------GKLNVVATYSILADIVKNVGGNKIELHSIVPVGVDPHEYDPLPANIQSAADADLIFYNGLNLETGNGWFDRMLETADKSREDKNQVVELSKGVK--PKY-------LTEKGKTSETDPHAWLDLHNGIIYTENVRDALVKADPDNADFYKENAKKYIDKLATLDKEAKQKFADLPENQKTLVTSEGAFKYFAARYGLKAAYIWEINTESQGTPDQMKQIVGIVEKEKVPNLFVETSVDPRSMESVSKETGVPIFAKIFTDSTAKKGEVGDTYLEMMRYNLDKIHDGLA


General information:
TITO was launched using:
RESULT:

Template: 5JPD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1404 36150 25.75 135.39
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.73

3D Compatibility (PKB) : 25.75
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.572

(partial model without unconserved sides chains):
PDB file : Tito_5JPD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5JPD-query.scw
PDB file : Tito_Scwrl_5JPD.pdb: