Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDNRPIGFLDSGVGGLTVVRELMRQLPHEEIVYIGDSARAPYGPRPAEQIREYTWQLVNFLLTKDVKMIVIACNTATAVVWEEIKAQ-LDIPVLGVILPGASAAIKSSQGGKIGVIGTPMTVQSDIYRQKIHDLDPDLQVESLACPKFAPLVESGALSTSVTKKVVYETLRPLVG-KVDSLILGCTHYPLLRPIIQNVMGPKVQLIDSGAECVRDISVLLNYFEINRGRD---AGPLHHRFYTTASSQSFAQIGEEWLEKEIHVEHVEL
5IJW Chain:A ((5-266))DRLAPIGIFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPQIRAHSLAIGDDLVSRGVKALVIACNTASSACLRDARERYSPVPVVEVILPAVRRAVAATRNGRIGVIGTQATIASGAYQDAFAAAR-DTEVFTVACPRFVDFVERGVTSGRQVLGLAEGYLEPLQLAEVDTLVLGCTHYPMLSGLIQLAMGDNVTLVSSAEETAKDLLRVLTELDLLRPHPDDPSVTAVRRFEATGDPEAFTALAARFLGPTLD------


General information:
TITO was launched using:
RESULT:

Template: 5IJW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1499 -81478 -54.35 -317.03
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain A : 0.80

3D Compatibility (PKB) : -54.35
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.80
QMean score : 0.590

(partial model without unconserved sides chains):
PDB file : Tito_5IJW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5IJW-query.scw
PDB file : Tito_Scwrl_5IJW.pdb: