Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAKRKVVVALGGNAILSTDASAKAQQ--EALMETAKYLVKFIEQGDELIISHGNGPQVGNLLIQQQAA-DSEKTPAMPLDTCVAMTEGSIGYWLQNAMGEVLKEKGIDKDVVSLVTQVIVDENDPSFKNPSKPVGPFYTEEEAKE-QMNADSTVTFKEDAGRGWRKVVASPKPISIKEARVIETLVDQGVITVSVGGG-GIPVVETATGLEGREAVIDKDFASEKLAEIIDADLLIVLTGVDNVYVNYQKPDQKKLETVTVSEMKQYIDEKQFAPGSMLPKVEAAIAFVEAKPNAKAIITSLENIENLLASEEGTIIVAD
4JZ8 Chain:D ((3-317))SAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGV--SPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYT-EQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEIVEYGVIKTLID-NNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-N----ERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQA-TGKMSIITSLSTAVDALNGKCGTRIIKD


General information:
TITO was launched using:
RESULT:

Template: 4JZ8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1719 37060 21.56 121.51
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain D : 0.81

3D Compatibility (PKB) : 21.56
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.523

(partial model without unconserved sides chains):
PDB file : Tito_4JZ8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4JZ8-query.scw
PDB file : Tito_Scwrl_4JZ8.pdb: