Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--------------------------------------------MINKNRLYTNLMINCELDNMENKNQCRQCAVCGRS--FPLKDLVSGEVIRNVISDEILKDHPDWSYSSFICRADLADYRIKYVQSLL--RSEKGELSNLENEVIGSMQRHELISQNTESDFDQNWTFGEKLADKIASFGGSWAFLIC------------FALFLTGWIVLNTVVMVDRPVDPYPFILLNLVLSCLAAIQAPIIMMSQNRQEAKDRLRSQHDYQINLKAELEIRHLHEALLHKAIHE-GFFSNIISR
5HJQ Chain:A ((78-367))ALRSYTEIQQLLQQGKKRDVKNILRENSWPINSPIRAQLWPMLCGQHLDGFYWEMVHQVFGTTELSEKPIMLPAFVDATHCLPYHLTSTGRAVADRIVNVLGYDCPDITYSP----------VLYPITSILLHFMSEEEAYICLAGLVGSKEK-VFINQ-TKLQHEVTWKTVMQIAKKHTKSATSYFQRICPGLKLERIFMDWCWWILAGLPFQHLVRIMDCYFHEGIKVLYRVALVILNLFHKEC---QSNNEWSPDNIKNDIGNALIKFCK-KIPVSPAKLLHAAFSIRGLSTQYISR


General information:
TITO was launched using:
RESULT:

Template: 5HJQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 926 -17672 -19.08 -79.24
target 2D structure prediction score : 0.48
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : -19.08
2D Compatibility (Sec. Struct. Predict.) : 0.48
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.310

(partial model without unconserved sides chains):
PDB file : Tito_5HJQ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5HJQ-query.scw
PDB file : Tito_Scwrl_5HJQ.pdb: