Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNHSDTLSLSLELLQQPSVTPID---HTCQTIMADRLAKVGFHIEPMRFG---DVDNLWARR-GTEGPVFCFAGHTDVVPTGRLDAWNSDPFAPEIRDGKLYGRGSADMKTALAAMVVASERFVAKHPNHKGSIAFLITSDEEGPAVNGTVKVIETLEKRNEKITWCLVGEPSSTH--KLGDIVKNGRRGSLNAVLKVQGKQGHVAY-PHLARNPIHEASPALAELCQTVWDNGNEYFPATSFQISNIHAGTGATNVIPGTLEVTFNFRYSTEVTAEQLKQRVHEILDKH---GLQYEIVWNLSGLPFLTPV-G-ELVNAAQTAILNVTGTETELSTSGGTSDGRFIAPTGAQVL-ELGVLNATIH-QINEHVDVHDLDPLTDIYEQILENLLA
1CG2 Chain:C ((17-390))-EQPAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIKGRGGKNLLLMSHMDTVYLK--GILAKAPFR--VEGDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKG-SFGSRDLIQEE---AKLADYVLSFEPTSAGDEKL----SLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNIDDK-----AKNLRFNWTIAKAGN-VSNIIPASATLNADVRYARNEDFDAAMKTLEERAQQKKLPEADVKVIVTRGRPAFNAGEGGKKLVDKAVAYYKEAGGTLGVEERTGGGTDAAYAALSGKPVIESLGLPGFGYHSDKAEYVDISAIPRRLYMAARLIMDLG-


General information:
TITO was launched using:
RESULT:

Template: 1CG2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1989 56060 28.19 157.03
target 2D structure prediction score : 0.64
Monomeric hydrophicity matching model chain C : 0.71

3D Compatibility (PKB) : 28.19
2D Compatibility (Sec. Struct. Predict.) : 0.64
1D Compatibility (Hydrophobicity) : 0.71
QMean score : 0.395

(partial model without unconserved sides chains):
PDB file : Tito_1CG2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1CG2-query.scw
PDB file : Tito_Scwrl_1CG2.pdb: