Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTNSLKNDKIGEIFDYQIFKEGIVSYFEQFMQANQAYVALHGQLNLPLKPKTRVAIVTCMDPRLHVAQALGLALGDAHILRNAGGRVTEDMIRSLVISQQQMGTREIVVLHHTDCGAQTFENEPFQEYLKEELGVDVSDQD-FLPFQDIEESVREDMQLLIESPLIPDDVIISGAIYNVDTGSMTVVEL
4YF4 Chain:A ((10-171))-----------------------GTVTDDYLANNVDYASGFKG-PLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVTDDVIRSLAISQRLLGTREIILLHHTDCGMLTFTDDDFKRAIQDETGIR--PTWSPESYPDAVEDVRQSLRRIEVNPFVTKHTSLRGFVFDVATGKLNEVT-


General information:
TITO was launched using:
RESULT:

Template: 4YF4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 630 -69743 -110.70 -433.18
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.75

3D Compatibility (PKB) : -110.70
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.553

(partial model without unconserved sides chains):
PDB file : Tito_4YF4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4YF4-query.scw
PDB file : Tito_Scwrl_4YF4.pdb: