Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTKRVLITGVSSGIGLAQARLFLEKGYQVYGVD---QGEKPLLEGDFRFLQRDLTLDLEPI------FDWCPQVDVLCNTAGVLDDYKPLLEQTAQDIQEIFEINYIIPVELTRYYLTQMLENKKGIIINMCSIASSLAGGGGHAYTSSKHALAGFTKQLALDYAEAGIQVFGIAPGAVKT--AMTAADFEPG-GLADWVASETPIKRWIEPEEIAELSLFLASGKASAMQGQILTIDGGWSLK
2D1Y Chain:B ((7-246))--KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRL-PEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAI-----RTRRDW-EDLHALRRLGKPEEVAEAVLFLASEKASFITGAILPVDGGMT--


General information:
TITO was launched using:
RESULT:

Template: 2D1Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1207 -35206 -29.17 -159.30
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain B : 0.76

3D Compatibility (PKB) : -29.17
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.502

(partial model without unconserved sides chains):
PDB file : Tito_2D1Y.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2D1Y-query.scw
PDB file : Tito_Scwrl_2D1Y.pdb: