Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMATPFWYNTALHLLKPFYRWRIKRRAESLELYQQECLERFGPFEAPKNVKAIWFHAVSVGETNAAQPLIEYYLKL-GQPVLVTNTTKTGQARAKSLFLKEPYLDLFQAV-YLP------------VDQKPLLKKFFELYQPKLLALVETELWPN-LIDQAKLQHVPCLLLNARLSEKSAKGYGKVSGLTAGMLKQLDWVLAQDSATRQRYVELGLDEHKSQVVGNIKFDIHAPEAFIKQAAQLRQQWYLE--NRQVVTIASTHAP-EEQQILEAFAPYLNSDRELVCIVVPRHPER-FDEVFEICQNLNLITHRRSMGQSIHASTQVYLADS--MGELWLWYALSQVCFVGGSLNEPGGGHNILEPMVLNVPTVVGPRYFNFQTIVDEFIDENAVLIAQDAQQVVDIWLACLAEPEATEQLVAQAHKVLQRNQGSLQKHIGVINRYLAEKS
1V4V Chain:A ((8-367))---------------------------------------------------VVLAFGTRPEATKMAPVYLALRGIPGLKPLVLLTGQHREQLRQ-ALS-L---FGIQEDRNLDVMQERQALPDLAARILPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPTPLAKANLLKEGKREEGILVTGQTGVDAVLLAAKL-----GRLPEGLPEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNPVVREAVFPVLK----------------GVRNFVLLDPLEYGSMAALMRASLLLVTDS-----G--GLQEEGAALGVPVVVLRNVTERPEGLKA--GILKLAG-TDPEGVYRVVKGLLENPEELSRMRKAKNPYGD--GKAGLMVARGVAWRLGL--


General information:
TITO was launched using:
RESULT:

Template: 1V4V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1783 -4342 -2.44 -12.81
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain A : 0.61

3D Compatibility (PKB) : -2.44
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.61
QMean score : 0.388

(partial model without unconserved sides chains):
PDB file : Tito_1V4V.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1V4V-query.scw
PDB file : Tito_Scwrl_1V4V.pdb: