Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--------------------------MKQFQLRRRKQMELVLPNNYVVIDEEE-----MMYLDGG--AYLSKRACQGICVALAMSPGIFIALAGAAVLTKKL-INYIKVGGLGGWLIGAAAGVLATAAGKI--AYCIGYGALNRGCDISGNPYPWDGFISATVR------------------------------------------------------------------------------------
4Q3K Chain:A ((20-260))QGMNISKITINQHVGVTLTCYVQDVSQEMSNMSKRPAMLIFPGGGYQFCSDREAEPIALSYLAKGYNAFVLRYSVKEHAVFPRPLIDAEDALSYLKDNAHALHINPDKIAVIGFSAGGHLATTLATEGKVRPNAVVLGYPALIR------HEKYWN-FPTPKVDQQTPEMFVFHTFEDDLVPLSHPLYIVEELSKANIPVEFHLFKSGVHGLSLGNKIVSNGLDKMIEDDVQVWFDLSCRWLDKVLDL


General information:
TITO was launched using:
RESULT:

Template: 4Q3K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 584 -15208 -26.04 -125.69
target 2D structure prediction score : 0.41
Monomeric hydrophicity matching model chain A : 0.58

3D Compatibility (PKB) : -26.04
2D Compatibility (Sec. Struct. Predict.) : 0.41
1D Compatibility (Hydrophobicity) : 0.58
QMean score : 0.214

(partial model without unconserved sides chains):
PDB file : Tito_4Q3K.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4Q3K-query.scw
PDB file : Tito_Scwrl_4Q3K.pdb: